Venkat Malladi's repositories
azure-benchmark-scripts
Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure
azure-storage-azcopy
The new Azure Storage data transfer utility - AzCopy v10
CromwellOnAzure
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
nf-canary
A minimal Nextflow workflow for testing infrastructure.
nf-dragen
POC Nextflow pipeline to run Illumina DRAGEN software
openapi-action
Uses 'openapi-core' to generate lint errors/warnings and show as checks in GitHub Actions
openapi-test-runner
An application allowing the TES servers to test their conformance to TES Specifications
openwdl.github
Public OpenWDL webpage
public_health_viral_genomics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
terraform
Terraform configuration files for the Sentieon software
tools
Python package with helper tools for the nf-core community.
viral-pipelines
viral-ngs: complete pipelines
warp
WDL Analysis Research Pipelines
wdl
Workflow Description Language - Specification and Implementations
workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.