vsmalladi

azure-benchmark-scripts

Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure

somatic_dna_wdl

azure-storage-azcopy

The new Azure Storage data transfer utility - AzCopy v10

configs

Config files used to define parameters specific to compute environments at different Institutions

CromwellOnAzure

Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nextflow

A DSL for data-driven computational pipelines

nf-canary

A minimal Nextflow workflow for testing infrastructure.

nf-core-testnf

nf-dragen

POC Nextflow pipeline to run Illumina DRAGEN software

nf-HAVoC

openapi-action

Uses 'openapi-core' to generate lint errors/warnings and show as checks in GitHub Actions

openapi-test-runner

An application allowing the TES servers to test their conformance to TES Specifications

openwdl.github

Public OpenWDL webpage

openwdl.github.io

pb-human-wgs-workflow-wdl

public_health_viral_genomics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

rnamods-nf

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

task-execution-schemas

terraform

Terraform configuration files for the Sentieon software

test-cromwell-workflow

tools

Python package with helper tools for the nf-core community.

viral-pipelines

viral-ngs: complete pipelines

warp

WDL Analysis Research Pipelines

wdl

Workflow Description Language - Specification and Implementations

wdl-HAVoC

wdl101

workflow-execution-service-schemas

The WES API is a standard way to run and manage portable workflows.