vsbuffalo

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

scythe

A 3'-end adapter contaminant trimmer

gplyr

msr

Process MS results in R, in a tidy way

snakemake-tutorial

Snakemake tutorial materials

stanhl

Stan syntax highlighting for knitr

good-news-everyone

Good news everyone! You can have Futurama in your shell again.

eidos.vim

A minimal syntax highlighting plugin for Vim for SLiM's edios language

cvtk

git-demo

A very quick demo of Git for beginners

annotatr

r-bioinfo-workshop

R/Bioinformatics Workshop

ms-ld

Example LD simulation with recombination using ms and libsequence.

paradox_variation

quotes

A repository of quotes I like.

tempautocov

Code and some data to reproduce Buffalo and Coop (2019)

slper

eve102

lifeweeks

A plot of your life's progress, in weeks

SLiM-Extras

Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself

CoordinateCleaner

Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.

dissertation

ecoengine

Programmatic interface to the Berkeley Ecoinformatics Engine

extinction_genetic_diversity

farbenfroh

fwdpp

fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations

scikit-allel

A Python package for exploring and analysing genetic variation data

SLiM

Selection on Linked Mutations: A forward population genetic simulation for studying linkage effects, such as hitchhiking, background selection, and Hill-Robertson interference.

x-ancestry

Materials for our paper "A Genealogical Look at Shared Ancestry on the X Chromosome"

x-ancestry-talk