vistalab / PRFmodel

vistalab/PRFmodel Issues

Cannot reproduce the standard analysis results and strange/corrupted PNG report
Updated a year ago2
Error running example
Updated a year ago21
Recommended workflow for running with real data?
Updated a year ago2
[prfanalyze-afni] make it possible to just run grid fit from option
Updated a year ago
[prfanalyze-aprf] seed option -2 (only grid) not working
Updated a year ago
[prfanalyze] include prfprepare options
Updated a year ago
[prfanalyze] create the option to not save results in .nii.gz format
Updated 2 years ago
About No BOLD images found
Updated 2 years ago6
prfanalyze: output does not show the model predictions
Closed 2 years ago
Add BIDS fields to the config file so that it reads the outputs from prfprepare properly
Updated 2 years ago1
Listing PRFmodel as a BIDS app
Updated 3 years ago
extra-bids requirements: sessions?
Updated 3 years ago5
prfanalyze config file: read files from derivatives/prfprepare
Updated 3 years ago1
prfanalyze-vista: Read the .mat from the Psychotoolbox output to read experimental params
Updated 3 years ago
Using prfanalyze-base to implement new analysis toolbox
Updated 3 years ago4
PRFreport: reconstruct back surfaces and plot results in fsnative/fsaverage
Updated 3 years ago
PRFreport: convert back from prfprepare's 2D to original 3D
Updated 3 years ago
Large, off-center RFs do not sum to 1?
Closed 3 years ago4
Remove scripts that are specific of Gari's paper, maintain generic scripts
Closed 3 years ago
Add Stimulus functionality to load any user's stimuli
Updated 4 years ago
Voxels with multiple receptive field
Closed 4 years ago2
compatibility with multiple runs
Updated 4 years ago2
looking for the dockerfiles
Closed 4 years ago3
[ENH] prfreport: add SNR
Updated 5 years ago
[TEST] type='css' results, add options to control size
Updated 5 years ago
[ENH] Add SNR to the synthetic .json file
Updated 5 years ago
[TEST] Run in human data
Closed 5 years ago1
[BUG] config.json returned as a folder
Updated 5 years ago2
[TEST] Run 8x8x8 to check the whole pipeline with non 1D files
Updated 5 years ago3
Nifti has 32700 limit per dimension, check gifti or other 1D formats or best way to do this
Updated 5 years ago5
Create an output file with the command line used to run the tool
Updated 5 years ago1
check sigmaMinor is always < sigmaMajor
Closed 5 years ago
[ENH] Make all the Docker containers write the used config file as part of the output so that we maintain original options used in the analysis
Closed 5 years ago
Popeye container: add the no hrf search as an option
Closed 5 years ago
[ENH] Popeye is using only one core in Docker (in linux server)
Closed 5 years ago
Popeye returns -y instead of y
Closed 5 years ago
[BUG] solve the overwriting problem for all the dockers
Updated 5 years ago1
[ENH] make prfanalyze/base/run.py more flexible
Closed 5 years ago9
[ENH] Check with tool authors and select all the options that should go to prfanalyze config file
Closed 5 years ago
[BUG] BIDS creates new files instead of overwriting or sending warning
Closed 5 years ago2
Edit default prfAnalyze-config-default files
Closed 5 years ago2
put the dynamic chunksize calculator back
Closed 5 years ago1
prfanalyze-vista writes root read-only config file
Closed 5 years ago
[ENH] Related to #22: make prfreport flexible as well, right now is reading and renaming by order
Updated 5 years ago
prfanalyze DEBUG not working as desired
Closed 5 years ago1
add link to the wiki whenever the prf-xxx is run, so that they know where to go for help
Closed 5 years ago
prfreport: make file names BIDS like
Closed 5 years ago
fix output message in prfreport
Closed 5 years ago
unify tool names to popeye, aprf, afni, vista
Closed 5 years ago
it seems that at least prfanalyze is run twice once invoked
Closed 5 years ago1