Stanford Vista Lab

vistalab

Stanford University

vistalab.stanford.edu

Stanford Vista Lab's repositories

vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.

Language:MATLAB146 50 202

docker

A repository for vistalab docker files

Language:Python25 23 2

vistadisp

Language:Matlab14 23 10

teachmri

Routines for teaching MRI principles in Stanford's Psych 204A

Language:MATLAB12 200

PRFmodel

Language:MATLABMIT11 19 62

vistateach

Matlab tutorials for courses in reading, image science, and MR

Language:MATLAB7 13 3

RTP-pipeline

Docker based Gear that runs the Reproducible Tract Profiles (RTP) pipeline

Language:Python6 20

scitran

Utilities to interact with Flywheel from the client side using the Matlab SDK.

Language:MATLABGPL-3.05 7 28

scitran-data

Data Readers and Writers

Language:PythonMIT4 14 20

BrainBeat

Language:MATLABMIT2 20 4

itkgray

ITKGray Branch of ITKSnap Src

Language:C++GPL-3.02 180

contrack_score

Matlab implementation of ConTrack_score

Language:Matlab1 80

coverageReading

Analyzing visual field coverage (field of view) in ventral occipital cortex. Emphasis on reading circuitry

Language:Matlab1 210

vistatest

Language:MATLAB1 11 1

acpc-anat

Normalize anatomicals to RAS and to acpc registering to MNI or providing AC-PC coordinates.

Language:ShellMIT040

dwi-flip-bvec

Flips bvec x, y, or z

Language:ShellMIT040

dwi-tools-source

Includes source code for ConTrack, Quench, DTIQuery and other tools

Language:C++0180

elastic_basis_pursuit

Elastic Basis Pursuit

Language:PythonMIT000

encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

Language:Matlab0190

EnsembleTractography

The code to perform the ensemble tractography and reproduce the results in the publication (Takemura et al. in press). Under construction.

Language:Matlab0190

fw-gear-dtiinit-diffusion-maps

Generate diffusion maps from dt6

Language:MATLAB0190

iqdwi

Image quality for diffusion weighted imaging

0180

JSONio

JSONio: a MATLAB JSON library

Language:CNOASSERTION0180

mrQ

Language:MATLABMIT020

qmr_web

Language:PHP020

retinalcurvature

Estimating the retinal curvature using rabbit and then human

Language:MATLAB010

rtp

Reproducible Tract Pipeline

0190

RTP-bvec-flip-detect

Neuro detect leverages the possibilities of deep learning to automatically detect and correct formatting errors of MRI scan data.

Language:Python0190

RTP-preproc

RTP-preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data

Language:Shell010

vistacompile

Repository where we place special vistasoft functions that we compile for containers

0190