vertesy / TheCorvinas

Various Scripts and Summaries

http://vertesy.github.io/TheCorvinas

vertesy/TheCorvinas Issues

Wiki
Updated 4 years ago
multiQC for 10X single-cell reads using the VBC RNA-seq pipeline
Updated 5 years ago
inline_list_char() is not working
Updated 7 years ago
Barcode N-mismatch generation by Koos
Closed 4 years ago2
Is name-line sufficiently checked in Concatenator.CELseq.py?
Closed 4 years ago
First column is separated by a space+tab not a tab in BarcodeCounts.tsv and TranscriptCounts.tsv but not in ReadCounts.tsv
Closed 4 years ago
Report Mappability, etc .sout style
Closed 4 years ago
Removing UMI-s 1 hamming away from an oversequenced UMI-transcript-cell combination
Closed 4 years ago
Faster Cell-Barcode collapsing
Closed 4 years ago
Fixing incorrect gene names in the dog transcriptome using regular expressions and in-place editing
Closed 4 years ago
val2col() does not keep names
Closed 4 years ago1
inline_vec.char() should copy the variable name by default
Closed 4 years ago
Update MapAndGo for 384
Closed 4 years ago
MapAndGo should parse the download link for each cout and sout file
Closed 4 years ago
MapAndGo assumes that the .fastq file has the ending _001.fastq
Closed 4 years ago
MapAndGo.py should create files with .tsv extension files in extract_counts_rb.pl
Closed 8 years ago
MapAndGo.py should check if cat_files (and other folders exist) before executing
Closed 8 years ago1
MapAndGo.py should write logs to a separate logs/ folder, not into the home dir
Closed 8 years ago
write.simple.tsv() does not return the lenght of a named vector
Closed 4 years ago
BUG in long vectors: inline_vec.char() should introduce after every 500 characters.
Closed 4 years ago
Add lazy = T option to read.simple...() functions: Read only if not in memory space!
Closed 4 years ago
Add read if !exists to read.simple functions
Closed 4 years ago
Give meaningful defaults in *_out folders in MapAndGo.py
Closed 8 years ago
Sloppy directory checking in MapAndGo.py in 5ac928d and before
Closed 8 years ago1
CodeNRoll: add option to "read.simple.tsv()" to read only if its not in the mem space
Closed 4 years ago
Snaggy images wont display
Closed 8 years ago1
read.simple.tsv() should handle first row's column-name. Maybe its done, look up
Closed 4 years ago
Error in eval(expr, envir, enclos) : could not find function "colorRampPalette" when loaded in the terminal
Closed 8 years ago
Open the functions for in text edit to find typos
Closed 8 years ago
Create the CodeAndRoll package
Closed 4 years ago1
as.named.vector loses NULL elements
Closed 8 years ago1
Open file feature to write.simple() functions
Closed 8 years ago
Annotate all functions with the description in the first line!
Closed 8 years ago
add abline() to wplot function
Closed 8 years ago1
wplot functions with an automatic legend?
Closed 8 years ago1