multiQC for 10X single-cell reads using the VBC RNA-seq pipeline

[Abel Vertesy]

Using the multiQC for 10X single-cell reads using the VBC bulk RNA-seq pipeline: cells from each cluster will be merged into one cluster.

Steps:

1. Demultiplex FASTQ/BAM file per cell using
   • cellrangr?
2. Export Barcodes per group from Seurat using ident and barcode names (?colnames)
3. Merge files from cells with the same
4. Run RNA-seq pipeline with parameters