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Valentina (ValentinaPeona)

ValentinaPeona

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resume.github.com

Resumes generated using the GitHub informations

Language:JavaScriptStargazers:61745Issues:344Issues:119

PyPDF2

A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files

Language:PythonLicense:NOASSERTIONStargazers:4998Issues:139Issues:623

Quiver

Quiver documentation and issue tracker

Stargazers:2259Issues:79Issues:1512

ChitChat

A native Mac app wrapper for WhatsApp Web

Language:Objective-CStargazers:1905Issues:88Issues:120

mummer

Mummer alignment tool

Language:C++License:Artistic-2.0Stargazers:439Issues:21Issues:199

pilon

Pilon is an automated genome assembly improvement and variant detection tool

Language:ScalaLicense:GPL-2.0Stargazers:338Issues:30Issues:169

FALCON

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Language:PythonLicense:NOASSERTIONStargazers:205Issues:54Issues:586

3d-dna

3D de novo assembly (3D DNA) pipeline

Language:ShellLicense:MITStargazers:199Issues:13Issues:182

lastz

Program for aligning DNA sequences, a pairwise aligner.

Language:CLicense:MITStargazers:193Issues:10Issues:57

scalable-data-science

Scalable Data Science, course sets in big data Using Apache Spark over databricks and their mathematical, statistical and computational foundations using SageMath.

Language:HTMLLicense:UnlicenseStargazers:164Issues:19Issues:1

ngsTools

Programs to analyse NGS data for population genetics purposes

Language:RLicense:GPL-3.0Stargazers:159Issues:15Issues:33

EDirectCookbook

License:MITStargazers:159Issues:33Issues:49

fermikit

De novo assembly based variant calling pipeline for Illumina short reads

Language:TeXLicense:NOASSERTIONStargazers:108Issues:16Issues:19

arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

Language:C++License:GPL-3.0Stargazers:90Issues:25Issues:105

LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

Language:C++License:NOASSERTIONStargazers:75Issues:9Issues:61

Parsing-RepeatMasker-Outputs

Few scripts facilitating the extraction of info from Repeat Masker .out files

Language:PerlLicense:MITStargazers:73Issues:6Issues:12

LINKS

⛓ Long Interval Nucleotide K-mer Scaffolder

Language:PerlLicense:GPL-3.0Stargazers:70Issues:11Issues:59

part-ii-individual-project-dev

Language:PythonStargazers:67Issues:17Issues:0

tigmint

⛓ Correct misassemblies using linked AND long reads

Language:PythonLicense:GPL-3.0Stargazers:54Issues:18Issues:53

GAPPadder

GAPPadder is tool for closing gaps on draft genomes with short sequencing data

Language:C++Stargazers:26Issues:3Issues:16

replong

source code of the paper "RepLong - de novo repeat discovery from long reads"

Language:ShellStargazers:16Issues:0Issues:0

RepeatLandscape

profile the repeat landscape in a genome

Language:PerlStargazers:15Issues:5Issues:0

longreadclub.github.io

Language:HTMLStargazers:8Issues:0Issues:0

Assemblathon

Code that was used in the Assemblathon 1 and 2 projects

Language:PerlStargazers:6Issues:4Issues:0

VarCall2015

Materials for the VarCall2015 course

Language:PythonStargazers:5Issues:0Issues:0

R-ecology

Data Carpentry R lessons on ecology

Language:HTMLLicense:NOASSERTIONStargazers:1Issues:2Issues:0

VarCall2016_Napoli

Materials for the VarCall2015 course

Language:HTMLStargazers:1Issues:2Issues:0

retrotransposons-spread

This python code is related to the article «Simulation based estimation of branching models for retrotransposons».

Language:PythonStargazers:1Issues:0Issues:0

Afitool

Afit software for the analysis of fitness and invasiviness of Aphid insects

Stargazers:1Issues:2Issues:0

part-ii-individual-project-dev

Language:PythonStargazers:1Issues:1Issues:0