upendrak

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Greenlight Biosciences

Durham, North Carolina

http://upendrak.github.io

Upendra Kumar Devisetty's starred repositories

LLM-workshop-2024

A 4-hour coding workshop to understand how LLMs are implemented and used

Language:Jupyter NotebookApache-2.025200

cheatsheets

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

Language:TeXCC-BY-4.0570500

dna2vec

dna2vec: Consistent vector representations of variable-length k-mers

Language:PythonMIT17900

RNA-FM

RNA foundation model

Language:Jupyter NotebookMIT17300

sRNA_Viewer

Tools for visualizing plant sRNA-seq alignments, emphasizing RNA sizes

Language:RMIT500

sirna-prediction

Predicts normalized sirna efficacy; using CNN & CatBoost

Language:Jupyter Notebook100

GNN4siRNA

GNN approach to face with the problem of siRNA-mRNA efficacy prediction

Language:Python500

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

Language:PythonApache-2.0538400

LLM101n

LLM101n: Let's build a Storyteller

OmicNavigator

Open-Source Software for Omic Data Analysis and Visualization

Language:RNOASSERTION3100

thread

AI-powered Jupyter Notebook — use local AI to generate and edit code cells, automatically fix errors, and chat with your data

Language:JavaScriptAGPL-3.098900

NYU-AISP24

NYU Artificial Intelligence Spring 2024

4300

TransformerFromScratch

Tutorial for Harvard Medical School ML from Scratch Series: Transformer from Scratch. Demo the usage of transformer in various domains: Music sheet, audio signal, image generation & discrimination

Language:PythonMIT2700

figeno

Tool for plotting sequencing data along genomic coordinates.

Language:PythonGPL-3.022600

docker_for_r_tutorial

How to add a Docker image to your R project to improve reproducibility

Language:DockerfileMIT600

bookclub

Notes and links from the book club meetings

Language:Jupyter Notebook45700

Generative-AI-with-LLMs

In Generative AI with Large Language Models (LLMs), you’ll learn the fundamentals of how generative AI works, and how to deploy it in real-world applications.

Language:Jupyter Notebook36700

RTM-align

Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.

Language:C++MIT500

iSeq

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Language:ShellMIT5700

wave-cli

Command line tool for Wave containers provisioning service

Language:JavaApache-2.01200

wave

On-demand containers provisioning service

Language:GroovyAGPL-3.02700

awesome-nextflow

A curated list of nextflow based pipelines

CC0-1.055700

create-llama

The easiest way to get started with LlamaIndex

Language:TypeScriptMIT60100

BatchEffectsPackage

The MBatch R package and Docker image are designed to help assess and correct for batch effects.

Language:RNOASSERTION1600

llm.c

LLM training in simple, raw C/CUDA

Language:CudaMIT2143100

marvin

✨ Build AI interfaces that spark joy

Language:PythonApache-2.0497800

taipy

Turns Data and AI algorithms into production-ready web applications in no time.

Language:PythonApache-2.0974500

miniprot

Align proteins to genomes with splicing and frameshift

Language:CMIT30800

degust

An interactive web-tool for RNA-seq analysis

Language:JavaScriptGPL-3.06600

ML-For-Beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

Language:HTMLMIT6814300