Uhlmann Group @ EMBL-EBI

Uhlmann Group @ EMBL-EBI's repositories

splinedist

SplineDist: Automated Cell Segmentation with Spline Curves

Language:Jupyter NotebookBSD-3-Clause61 8 10

muMatch

Pipeline for putting surface meshes into correspondence

Language:PythonBSD-3-Clause23 3 3

pyshot

A Python API for the SHOT descriptor

Language:C++GPL-3.016 4 5

shapeanalysis101

A tutorial of classical shape analysis methods

Language:Jupyter NotebookBSD-3-Clause11 3 5

AURA-Net

Language:Jupyter Notebook5 20

napari-splineit

Util to visualize and manipulate spline curves in Napari

Language:PythonBSD-3-Clause500

imagequantification101

Language:Jupyter NotebookBSD-3-Clause200

nuclear_phenotyping

Language:Python200

cir4mics

Simulating structurally variable Nuclear Pore Complexes for Microscopy

Language:Jupyter NotebookMIT100

opt2mesh

Extract meshes from Optical Projective Tomography data

Language:PythonGPL-3.01 20

bioimage_phenotyping

Language:Jupyter Notebook000

Cestimii

Curvature Estimation using Integral Invariants

Language:PythonBSD-3-Clause000

spline-interpolation

Language:Jupyter NotebookBSD-3-Clause000

bioimage_embed

Language:Python000

cpnet

A Learning Based Formulation of Parametric Curve Fitting for Bioimage Analysis.

Language:PythonMIT030

middle-axis-estimations

Language:PythonMIT000

napari-splinedist

Language:PythonMIT000

SimulateNPCs

Simulate structurally variable Nuclear Pore Complexes

Language:PythonMIT000

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

Language:Jupyter NotebookMIT000