tyjo / coptr

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing

tyjo/coptr Issues

cm.pkl not found in extract step
Updated 3 months ago2
Accompanying release for each tag
Updated 10 months ago
Prevalence differences in experiments
Closed 3 years ago11
Time series PTR estimation
Closed 3 years ago3
How should missing values in the output be treated?
Closed 3 years ago4
CoPTR should throw an error on invalid parameter choices
Updated 3 years ago2
Feature Request: Visualization
Closed 3 years ago3
Some more ideas
Updated 3 years ago4
Paired-end reads
Closed 3 years ago4
minimap2 instead of bowtie2?
Closed 3 years ago3
Error in last step!
Closed 3 years ago6
Location for OriC?
Closed 3 years ago6