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Steve Chervitz Trutane (trutane)

trutane

Geek Repo

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17

following

118

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Location:San Francisco Bay Area

Home Page:https://en.wikipedia.org/wiki/User:SteveChervitzTrutane

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bioperl

Steve Chervitz Trutane's starred repositories

clinvar

ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.

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nextflow

A DSL for data-driven computational pipelines

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Rectangle

Move and resize windows on macOS with keyboard shortcuts and snap areas

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iTerm2

iTerm2 is a terminal emulator for Mac OS X that does amazing things.

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TINC

Tumour-in-Normal Contamination assessment with evolutionary theory.

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vrs-hackathons

Project tracking for GA4GH Variation Representation Specification hackathons

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MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

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decifer

DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF).

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Web3

This is where we dump all the web 3 infromation

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verkko

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vg

tools for working with genome variation graphs

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manim

A community-maintained Python framework for creating mathematical animations.

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manim

Animation engine for explanatory math videos

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obi

The Ontology for Biomedical Investigations

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jless

jless is a command-line JSON viewer designed for reading, exploring, and searching through JSON data.

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MetBrewer

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

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concourse

Concourse is a container-based continuous thing-doer written in Go.

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FAIR-nanopubs

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ebe-python

a number theory package in python

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gene.iobio

Gene.iobio vue

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vcf.iobio.io

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rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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random_forests

An overview of decision trees and the random forest ML algorithm

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STAR

RNA-seq aligner

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somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

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sentieon-dnaseq

Sentieon DNAseq

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GeneWikiCentral

GeneWiki Organization

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gwern.net

Site infrastructure for gwern.net (CSS/JS/HS/images/icons). Custom Hakyll website with unique automatic link archiving, recursive tooltip popup UX, dark mode, and typography (sidenotes+dropcaps+admonitions+inflation-adjuster).

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BioCantor

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FastQ-Screen

Detecting contamination in NGS data and multi-species analysis

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