TranSMART Project's repositories
transmart-base-ui
Boilerplate code for tranSMART UI
transmartApp
tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
transmart-data
Tools for managing tranSMART's database
transmart-test
Functional tests for tranSMART
transmart-core-db
TranSMART Core
blend4j-plugin
blend4j-plugin is a grails plugin to access galaxy.
transmart-xnat-viewer
Connector to link tranSMART to an XNAT server
transmart-rest-api
HTTP available tranSMART RESTful API
transmart-metacore-plugin
The tranSMART plugin Metacore
transmart-gwas-plink
Plink integration for tranSMART
transmart-legacy-db
Contains the Grails domain declarations of the legacy transmart schema
transmart-extensions
Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
folder-management-plugin
The transmart (and grails) plugin that contains the folder-management elements.
tranSMART-ETL
tranSMART ETL pipelines and configurations
Scripts
A collection of scripts for managing all the tranSMART Foundation repositories
transmart-gwas-plugin
The transmart (and grails) plugin that contains the GWAS elements.
transmart-core-api
constraints
RInterface
A R module with packaged functions to query the tranSMART database directly
GWAVA
Genome Wide Association Study Visualizer (from Pfizer)
mydas
mydas is an easy-to-extend Java DAS server framework.
transmart-ICE
ICE tool for transmart ETL (formerly FCL4tranSMART)
transmart-batch
tranSMART pipeline alternative to ETL, using Spring Batch
transmart-horde
This contains code for a prototype of "federation"
transmartApp-Config
external configuration files for tranSMART application