TranSMART Project's repositories
transmartApp
tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
tranSMART-ETL
tranSMART ETL pipelines and configurations
RInterface
A R module with packaged functions to query the tranSMART database directly
transmartApp-Config
external configuration files for tranSMART application
transmart-data
Tools for managing tranSMART's database
transmart-rest-api
HTTP available tranSMART RESTful API
transmart-core-api
constraints
transmart-core-db
TranSMART Core
transmart-extensions
Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
transmart-ICE
ICE tool for transmart ETL (formerly FCL4tranSMART)
transmart-test
Functional tests for tranSMART
transmart-base-ui
Boilerplate code for tranSMART UI
blend4j-plugin
blend4j-plugin is a grails plugin to access galaxy.
folder-management-plugin
The transmart (and grails) plugin that contains the folder-management elements.
transmart-batch
tranSMART pipeline alternative to ETL, using Spring Batch
transmart-gwas-plink
Plink integration for tranSMART
transmart-gwas-plugin
The transmart (and grails) plugin that contains the GWAS elements.
transmart-horde
This contains code for a prototype of "federation"
transmart-legacy-db
Contains the Grails domain declarations of the legacy transmart schema
transmart-metacore-plugin
The tranSMART plugin Metacore
transmart-xnat-viewer
Connector to link tranSMART to an XNAT server