whole-genome-bisulfite-sequencing
There are 1 repository under whole-genome-bisulfite-sequencing topic.
ben-laufer / DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Language:R 38A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
Language:Shell 20cemordaunt / comethyl
An R package for weighted region comethylation network analysis
Language:R 7A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
Language:R 6Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
Language:R 5Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
Language:R 4Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
Language:R 1Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
Language:R 0Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease
Language:R 0