structure-variation

There are 0 repository under structure-variation topic.

orangeSi / GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
genomes genecluster synteny crosslink bioinformatics svg vcf snp bam read-mapping depth visualization structure-variation genome-viewer sv transcriptomics igv-like comparative-genomics long-reads indel
Language:HTML 31
Archieyoung / SVAN
A Structure Variantion Annotation Tool
structure-variation annotation
Language:Python 2
Shuhua-Group / SVanalysis_STARProtocols
A protocol for applying low-coverage whole-genome sequencing data in structure variation studies
population-genetics structure-variation transcriptomics
Language:Shell 1
geniusphil / run-annotsv
Annotation structure variant
annotation annotsv copy-number-variation structure-variation
Language:Shell
orangeSi / Grainbow
show the genome structure variation or assembly error by pair-end or mate-pair reads
bioinformatics genome-assembly rainbow structure-variation reads-based
Language:Perl

orangeSi / GSSplayground