scispacy

There are 0 repository under scispacy topic.

• agatha

  JSybrandt / agatha

  AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach

  molierehypothesis-generationredisdaskdask-distributedspacyscispacyscibertbert
  Language:Python 55

• SeanNaren / CORD-19-ANN

  ANN Search through the COVID CORD-19 Dataset using SBERT.

  pytorchcovid-19cord-19spacyscispacymachine-learningtransformer
  Language:Python 25

• RyanDsilva / medical-ner

  :hospital: Clinical NER with UMLS lookup :hospital:

  scispacyspacymedical-natural-language-processingumlsflaskpythonflutteroptical-character-recognition
  Language:Jupyter Notebook 20

• Nguyendat-bit / UMLS-KG

  Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy

  knowledge-graphneo4jneo4j-driverpythonscispacyumls
  Language:Python 7

• rubalsxngh / MedGraph-Biomedical-Knowledge-Graph-with-Mondo-Ontology

  MedGraph is a project focused to construct biomedical knowledge graph. It harnesses the power of pubMed for data retrieval, spaCy for NLP, Mondo Ontology for semantic enrichment, and pywikibot for integrating external knowledge. The final step involves deploying the graph onto the Neo4j database, creating a platform to explore medical information.

  jupyter-notebookmondoneo4jnlppython3pywikibotscispacynosql-databasesknowledge-graphnatural-language-processingnatural-language-understanding
  Language:Python 7

• thepanacealab / annotated_twitter_covid19_dataset

  A Biomedically Oriented automatically annotated Twitter COVID-19 Dataset

  spacyscispacymedspamedacyannotated-datasetscovid-19covid19-data
  Language:Python 7

• magesh-technovator / bio-medical-clinical-ner

  Collection of bio-medical and clinical ner models in spacy, stanza, flair with some utility files

  med7bio-medical-nerclinical-nerscispacystanzanernamed-entity-recognitionehr-nerehr-datahunflairflair
  Language:Python 4

• giuliacassara / RealTimeTherapyFinder

  Use SciSpacy to retrieve medical knowledge from PubMed and build a real-time platform for disease-therapy associations.

  biopubmedscapingscispacy
  Language:Python 3
• spacy-nlp

  jaytimm / spacy-nlp

  spaCy & scispacy wrappers

  nlpscispacyspacy
  Language:Python 3

• joe32140 / snomed-ontology-parser

  Analyzing medical concept distribution of clinical text with Snomed ontology.

  umlsmedspacyontologyscispacysnomed-ctspacy
  Language:Jupyter Notebook 3

• izuna385 / ScispaCy-Candidate-Generator

  Generating Candidate Entities with ScispaCy

  scispacynatural-language-processingspacyentity-linkingallennlp
  Language:Python 2

• chenx-git / Medical-Notes-Entities-Extraction-and-Network-Visualization

  Using scispaCy extracting and identifying entities in medical text data and generate network and sub-networks for visualizations

  nlpnetwork-analysisscispacypython
  Language:Jupyter Notebook 1

• Dimas263 / How-to-use-scispaCy-Entity-Linkers-for-Biomedical-Named-Entities

  Scispacy Entity Linker

  pythonjupyter-notebookmachine-learningnatural-language-processingnlpscispacyspacydimasdimas-dwi-putradimas263
  Language:Jupyter Notebook 1

• TracyRage / muddy_db

  muddy_db - mud volcano database

  s2orcscispacynlpminingncbi-taxonomyshinymud-volcanospacysemantic-dashboard
  Language:R 1

• Beth526 / metis_project_4

  NLP on biology paper abstracts

  pubmedcell-biologynlpscispacy
  Language:Jupyter Notebook 0

• TracyRage / muddy_mine

  muddy_mine - mining pipeline

  s2orcnlpscispacyspacyncbi-taxonomymud-volcanoecologyhydrocarbons
  Language:Python 0

• antoniopaya22 / COVID19-Entity-Recognition

  COVID19-Entity-Recognition uses scispaCy to locate symptoms and medications in the CORD-19 corpus.

  covid-19cord19scispacysymptomsmedications
  Language:Python

• Pranima23 / MedicalDataExtraction

  An NLP approach to extract useful data from medical case studies

  nlp-machine-learningpythonpython3scispacyspacyspacy-stanzastanza
  Language:Jupyter Notebook