prophyle

There are 3 repositories under prophyle topic.

prophyle / prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
metagenomics bwt phylogeny metagenomic-classification bioinformatics bacteria viruses burrows-wheeler-transform k-mers phylogenetic-compression simplitigs prophyle
Language:Python 31
prophyle / prophasm
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
de-bruijn-graphs k-mers simplitigs prophyle
Language:C++ 26
karel-brinda / MiniPhy
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
assemblies bacteria bioinformatics compression genomes indexing k-mers mof phylogenetic-compression phylogeny prophyle
Language:Python 12
prophyle / prophex
ProPhex – an exact k-mer index using Burrows-Wheeler Transform
burrows-wheeler-transform bwt index k-mers prophyle kmer-indexing
Language:C 6

prophyle / prophyle