neutrality-test

There are 0 repository under neutrality-test topic.

• CATE

  theLongLab / CATE

  A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

  1000genomescudacuda-programmingevolutionary-algorithmsevolutionary-biologyevolutionary-computationgenetic-algorithmgeneticsneutrality-testvcfvcf-datavcf-filescuda-toolkitehhextended-haplotype-homozygositymk-testneutralitytajima
  Language:Cuda 11

• cbg-ethz / scSomMerClock

  Test for a molecular clock based on the phylogenetic tree inferred from single-cell DNA sequenzing data

  scdnaseqcancer-genomicsmolecular-clockneutrality-test
  Language:Python 6

• helmutsimon / selectiontest

  Test for selective neutrality using relative likelihood.

  neutrality-testpopulation-geneticsmodel-likelihood
  Language:Python 1

• helmutsimon / NeutralityTest

  Python scripts and Jupyter notebooks for paper: Simon and Huttley 2021 A New Likelihood-based Test for Natural Selection bioRxiv doi = 10.1101/2021.07.04.451068.

  neutrality-testpopulation-geneticsmodel-likelihood
  Language:Jupyter Notebook