bcl2fastq

There are 0 repository under bcl2fastq topic.

• nf-core / demultiplex

  Demultiplexing pipeline for sequencing data

  nf-corenextflowworkflowdemultiplexingilluminabcl2fastqpipelinebases2fastqelementbiosciences
  Language:Nextflow 34

• yodeng / fsplit

  for split fastq from mix bcl or fastq data by barcode/index

  barcodebcl2fastqsplit
  Language:Python 6

• angelovangel / nxf-bcl

  A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

  nextflow-pipelinebcl2fastqilluminainteropmetricsfastq-files
  Language:Nextflow 4

• bixBeta / CFG

  RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

  illuminademultiplexingbcl2fastqfastqcmultiqcstaralignmenthomer
  Language:R 4

• NYU-Molecular-Pathology / demux-nf

  Nextflow pipeline for Illumina NGS demultiplexing

  nextflowpipelinedemultiplexingbcl2fastq
  Language:Nextflow 3

• angelovangel / nextflow-bcl-shiny

  a shiny frontend for the nextflow-bcl pipeline

  bcl2fastqilluminangs-analysisshiny-apps
  Language:R 1

• OpenOmics / weave

  An awesome BCL demultiplexing and FastQ quality-control pipeline

  bcl2fastqbclconvertcontamination-screeningdisambiguate-genomesfastpfastq-quality-controlkaijukraken2krona
  Language:Python 1

• patidarr / bcl2fastq

  bcl2fastqhiseqrunreportsnakemake
  Language:Perl 1

• csawye01 / nf-core-demultiplex

  Demultiplexing pipeline for sequencing data

  nf-corenextflownextflow-pipelinesdemultiplexingfastqcbcl2fastq10xgenomicssinglecell
  Language:Nextflow 0

• savytskanatalia / bcl2fastq

  bcl2fastq by Illumina

  bcl2fastqdockerillumina
  Language:Dockerfile 0

• oicr-gsi / bcl2fastq

  Workflow for Illumina's bcl2fastq

  base-callingbcl2fastqilluminaseqware
  Language:C++