Anthony Azevedo's repositories
efficient_subpixel_registration
from http://www.mathworks.com/matlabcentral/fileexchange/18401-efficient-subpixel-image-registration-by-cross-correlation
FlyAnalysis
Analysis routines for data gathered with FlySound acquisition package
LabelSelectedFramesForDLC
Simple script to label imgXXX.png images for training sets for DLC
Matlab-Analysis
Code to port to different machines
Symphony-UI
MATLAB interface for the Symphony .NET framework
Acquisition
Acquisition
bmtk
Brain Modeling Toolkit
CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
dataCzar
A suite of utilities for managing lab code and data.
DeepLabCut
Markerless tracking of user-defined features with deep learning
dm_control
Google DeepMind's software stack for physics-based simulation and Reinforcement Learning environments, using MuJoCo.
FANC_auto_recon
Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
FlySongSegmenter
Signal in, sine and pulse song out
FlySound
Fly sounds
gvision
Video & image acquisition and experiment control for behavior neuroscience
jsonlab
JSONLab: a native JSON/UBJSON/MassagePack encoder/decoder for MATLAB/Octave
ovation-matlab
Ovation Matlab API and utilities
ParametersDB
ParametersDB creates and stores a Pandas representation of the parameter database
PtitPrince
python version of raincloud
pypylon
The official python wrapper for the pylon Camera Software Suite
RainCloudPlots
Code and tutorials to visualise your data that is both beautiful *and* statistically valid
Roth-Peranson
A python implementation of the nobel prize winning matching algorithm.
spikeDetection
Interactively detect spikes in D mel data
statistical-analysis-python-tutorial
Statistical Data Analysis in Python
symphony-core
Symphony data acquisition system core libraries