tomkinsc

carcassonne-shading

Small JS app to manipulate SVG files for printing or laser-cutting tiles for the board game Carcassonne.

augur

Pipeline components for real-time phylodynamic analysis

auspice

Web app for visualizing pathogen evolution

author-affiliations

Number and format affiliations in an author list.

bioconda.github.io

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.

conda

OS-agnostic, system-level binary package manager and ecosystem

conda-recipes

build and test recipes for conda

deco

dx-streaming-upload

The DNAnexus incremental upload script packaged as an Ansible Role

Freyja

Depth-weighted De-Mixing

galaxy

Data intensive science for everyone.

homebridge-ecowitt

A Homebridge plugin supporting a wide range of Ecowitt sensors

igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

Krona

Interactively explore metagenomes and more from a web browser.

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

miniwdl-colima

implementation for miniwdl colima backend plugin

moto-feedstock

A conda-smithy repository for moto.

mulled

Mulled - Automatized Containerized Software Repository

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

perl-feedstock

A conda-smithy repository for perl.

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

popart-current

ps70

Course Repository for PHYSCI 70: Introduction to Digital Fabrication

scipaper-snakemake-2020

SciPaper project.

snipit

snipit: summarise snps relative to your reference sequence

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

subsampler

forked from andersonbrito/subsampler: scripts for subsampling genomic data based on epidemiological time series data

VEME_2023_NGS_Denovo_assembly

VEME 2023 NGS Denovo Assembly Tutorial

VEME_NGS_Variant_Calling

VEME 2023 NGS Variant Calling Tutorial

viral-ngs

viral-ngs