Tim's repositories
Anything-3D
Segment-Anything + 3D. Let's lift anything to 3D.
APART-QSM
An iterative magnetic susceptibility sources separation method
ASPIRE
MRI phase combination algorithms for array-coils
bart-webinars
Landing page for BART Webinars
bart-workshop
Material for BART demos.
brainextractor
A re-implementation of FSL's Brain Extraction Tool in Python
brkraw-bart
BART Toolbox integration for Brkraw
brkraw_tutorials
Repository of the BrkRaw Python API tutorials with the Jupyter Notebook
Conjugate-Gradient
Painless conjugate gradient notebooks
extractBrain
Matlab function/app to extract rodent brain in MRI data based on PCNN algorithm.
flip-angle-optimization
Optimisation of flip angles for optimising SNR for a given PSF in multi-pulse experiments, including SPLICE
Interactive-QSM-ISMRM-educational-talk
This interactive notebook illustrates concepts from my QSM educational talk at ISMRM 2021
labelme-with-segment-anything
Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).
lrslibrary
Low-Rank and Sparse Tools for Background Modeling and Subtraction in Videos
MarzWorkbench
FreeCAD Workbench for guitar design
mrf
An end to end, vendor neutral MRF package
mri-sim-py
Magnetic Resonance Imaging (MRI) Simulation Code in Python
MRiLab
A Numerical Magnetic Resonance Imaging (MRI) Simulation Platform
MRSignalsSeqs
Stanford University Rad229 Class Code: MRI Signals and Sequences
NN-SVG
Publication-ready NN-architecture schematics.
QSM
Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.
QUIT
A set of tools for processing Quantitative MR Images
recon
Primal-Dual Solver for Inverse Problems
segment-anything-gui
A matplotlib GUI to run the Segment Anything Model
singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
t2shuffling-support
Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"