Tim's repositories
ANTs
Advanced Normalization Tools (ANTs)
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
brainchop
Brainchop: In-browser 3D MRI rendering and segmentation
brukerapi-python
A Python package providing I/O interface for Bruker data sets
chchchchchat_gpt
ChatGPT (Do this for me!)
freesurfer
Neuroimaging analysis and visualization suite
Grounded-Segment-Anything
Grounded-SAM: Marrying Grounding DINO with Segment Anything & Stable Diffusion & Recognize Anything - Automatically Detect , Segment and Generate Anything
jemris
JEMRIS is a versatile, open-source, multi-purpose MRI simulator.
MedLSAM
MedLSAM: Localize and Segment Anything Model for 3D Medical Images
MedSAM
The official repository for MedSAM: Segment Anything in Medical Images.
MetaCLIP
Everything about MetaCLIP: curation/training code, metadata, distribution and pre-trained models.
mri-simulator
MRI simulator for educational purposes written in MATLAB
narrator
David Attenborough narrates your life
neurodesktop
The plug-and-play, browser-accessible, containerised data analysis environment.
nighres
Processing tools for high-resolution neuroimaging
nmrglue
A module for working with NMR data in Python
NORDIC_Raw
Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
numerical-tours
Numerical Tours of Signal Processing
pulseq_tutorials
This is a collection of various Pulseq tutorials, which is supposed to grow in future
pyenv
Simple Python version management
pypulseq
Pulseq in Python
qMRLab
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
RodentMRISkullStripping
U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
segment-anything-ui
Segment anything UI for annotations
sigpy
Python package for signal processing, with emphasis on iterative methods
sunrise
NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session