timbitz

Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

Isosceles

The Isoforms from Single-Cell; Long-read Expression Suite

Aligater

Software suite for detection/analysis of chimeric RNAs from LIGR-seq data

EvoDuplexes.jl

A Julia package to fold all local and long-range RNA duplexes.

Isosceles_Paper

BrindlePlots.jl

Visualization package for Whippet.jl

FMIndexes.jl

FM-index for full-text search

Bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

deSALT

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

diffR

BioSequencesKmers.jl

Kmers from BioSequences 2.0.5

FitHiChIP

Statistically Significant loops from HiChIP data

IntervalTrees.jl

A data structure for efficient manipulation of sets of intervals

SuffixArrays.jl

Native Julia suffix array implementation; Derived from sais

timbitz.github.io

vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.

WaveletMatrices.jl

The Wavelet Matrix