harlan barker's repositories
population_genetics_AADR
Interactive visualization of population genetics data for ~10,000 modern and ancient individuals.
Ensembl_species_nt_freq
Nucleotide counts and frequencies of 318 species
Language:Python000
gt-dimred
Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts"
Language:Jupyter Notebook000
GTEx-gene-expression-correlation
Correlation quick correlation analysis of gene expression using the GTEx dataset.
Language:Python000
TFBS_footprinting
Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.
TFBS_footprinting3
Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.
Language:Python000
umap_review
A review of the use of UMAP in population genetics
Language:Jupyter Notebook000