theislab / hadge

Comprehensive pipeline for donor demultiplexing in single cell

https://hadge.readthedocs.io/en/latest/

theislab/hadge Issues

Issues with the containers for hash processing
Updated 4 months ago
Test should test all methods
Updated 5 months ago
Error: run_multi:gene_demultiplexing:summary (1); work-dir=null: Not a valid path value: 'None'
Closed 5 months ago2
nf-core-ize notes
Updated 6 months ago1
Vireo error: _multiprocessing.cpython-39-x86_64-linux-gnu.so: failed to map segment from shared object
Updated 6 months ago1
Freemuxlet fails during popscle dsc-pileup due to different order of bam and vcf.
Closed 7 months ago5
Render notebook
Closed 7 months ago
Error demuxlet: work-dir=null, Path value cannot be null
Closed 7 months ago3
Potential variable name bug - freemuxlet.nf: grouplist_name
Closed 7 months ago3
Add scverse support
Closed 7 months ago3
Add some hashing tools
Closed a year ago3
enable multi-sample
Closed a year ago
Deploy docs on RTD
Closed a year ago
Add resource specifications
Closed a year ago
Add documentation
Closed a year ago