This repository contains code for benchmarking the effect of feature selection on scRNA-seq atlas construction and use.
For more information please refer to the documentation on the wiki.
bin/
- Scripts used in Nextflow workflowsfunctions/
- Functions used across multiple scripts
conf/
- Nextflow configuration filesenvs/
- conda environment YAML filesoutput/
- Output from Nexflow workflows (not included in git)reports/
- RMarkdown files and functions for output reportswork/
- The Nextflow working directory (not included in git)workflows/
- Nextflow workflow filesLICENSE
- The project licensemain.nf
- Main Nextflow workflow filenextflow.config
- Main Nextflow config fileREADME.md
- This READMEstyle_bin.sh
- A script for styling the files inbin/