theislab / HRCA-reproducibility

Scripts related to the Human Retina Cell Atlas (Chen / Theis labs).

Human Retina Cell Atlas v1 | Integration benchmark and query-to-reference

In this repository, notebooks are provided for the following analyses:

1. Data setup, integration pipeline, and metrics calculation (using scIB) (notebooks)
2. Visualization and comparison of methods using generated metrics (notebooks)
3. Query to reference onto the retina reference, using scArches (notebooks).

Data downloads (h5ad)

• t.b.c.

References

• t.b.c.

Issues

For usability and bug reports, please submit an issue.