thecobb's repositories
Adafruit_Python_MPR121
Python library for interfacing with a MPR121 capacitive touch sensor on the Raspberry Pi, BeagleBone Black, etc.
Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
brainhacks
Anything related to neurohacking that I'm working on
BYB-Neural-Recorder
A neural recording app for the PC and Macs. Runs on Windows, Linux and OSX
ca_source_extraction
Complete Matlab pipeline for large scale calcium imaging data analysis
cellfinder
Automated 3D cell detection and registration of whole-brain images
cellfinder-core
Standalone cellfinder cell detection algorithm
cellfinder-napari
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari
Class-Personal-Projects
This is a depo where I'll post code I'm working on for classes and update it with time to improve it
deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
DeepSlice
A python package which aligns histology to the Allen Brain Atlas using deep learning.
device-arduino
Sample code to connect Arduino devices to the IBM Watson IoT Platform
filterpy
Python Kalman filtering and optimal estimation library. Implements Kalman filter, particle filter, Extended Kalman filter, Unscented Kalman filter, g-h (alpha-beta), least squares, H Infinity, smoothers, and more. Has companion book 'Kalman and Bayesian Filters in Python'.
first-project
This will be my first project and mainly be used for practicing my interfacing with Github
fMRI-Data-project
A repository for the code that will be used in the fMRI analysis of Columbia's functional imaging of the brain course.
habaneroMSubmit
For submission of Matlab functions/scripts (with Matlab functions/scripts) to Columbia University's Habanero HPC.
martin_et_al_cell_2019
Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"
napari
napari: a fast, interactive, multi-dimensional image viewer for python
RPiCameraPlugin
A plugin for the open-ephys plugin-GUI to control a Raspberry Pi camera
ultrasound-nerve-segmentation
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras