thecobb

MultiNEAT

Portable NeuroEvolution Library

Adafruit_Python_MPR121

Python library for interfacing with a MPR121 capacitive touch sensor on the Raspberry Pi, BeagleBone Black, etc.

Analyzing_Neural_Time_Series

python implementations of Analyzing Neural Time Series Textbook

brainhacks

Anything related to neurohacking that I'm working on

BYB-Neural-Recorder

A neural recording app for the PC and Macs. Runs on Windows, Linux and OSX

ca_source_extraction

Complete Matlab pipeline for large scale calcium imaging data analysis

cellfinder

Automated 3D cell detection and registration of whole-brain images

cellfinder-core

Standalone cellfinder cell detection algorithm

cellfinder-napari

Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari

Class-Personal-Projects

This is a depo where I'll post code I'm working on for classes and update it with time to improve it

csvkit

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

dabl

Data Analysis Baseline Library

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

DeepSlice

A python package which aligns histology to the Allen Brain Atlas using deep learning.

device-arduino

Sample code to connect Arduino devices to the IBM Watson IoT Platform

e6691_2022spring_paperreviewsrepo_shared

EEGLearn

A set of functions for supervised feature learning/classification of mental states from EEG based on "EEG images" idea.

filterpy

Python Kalman filtering and optimal estimation library. Implements Kalman filter, particle filter, Extended Kalman filter, Unscented Kalman filter, g-h (alpha-beta), least squares, H Infinity, smoothers, and more. Has companion book 'Kalman and Bayesian Filters in Python'.

first-project

This will be my first project and mainly be used for practicing my interfacing with Github

fMRI-Data-project

A repository for the code that will be used in the fMRI analysis of Columbia's functional imaging of the brain course.

habaneroMSubmit

For submission of Matlab functions/scripts (with Matlab functions/scripts) to Columbia University's Habanero HPC.

martin_et_al_cell_2019

Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"

Medium

Code related to blog posts on my Medium page

mousecam

A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice

napari

napari: a fast, interactive, multi-dimensional image viewer for python

RPiCameraPlugin

A plugin for the open-ephys plugin-GUI to control a Raspberry Pi camera

sciluigi

A light-weight wrapper library around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular

siren

Official implementation of "Implicit Neural Representations with Periodic Activation Functions"

ultrasound-nerve-segmentation

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow