tgstoecker

Tyll Stöcker's starred repositories

biocode

Bioinformatics code libraries and scripts

Language:PythonMIT47900

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

Language:PythonMIT8200

awesome-shiny-extensions

🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

CC0-1.0144400

shinydashboardPlus

extensions for shinydashboard

Language:RNOASSERTION45300

ggExtra

📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements

Language:RNOASSERTION37900

beautiful-jekyll

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

Language:HTMLMIT531000

advanced-shiny

🤹 Shiny tips & tricks for improving your apps and solving common problems

Language:R119700

hexSticker

:sparkles: Hexagon sticker in R

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ggtreeExtra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

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ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

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ggmsa

:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2

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memes

An R interface to the MEME Suite

Language:RNOASSERTION4300

ShinyCell

Shiny Interactive Web Apps for Single-Cell Data

Language:RGPL-3.014800

methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

Language:PythonApache-2.013100

pyranges

Performant Pythonic GenomicRanges

Language:PythonMIT43600

gffutils

GFF and GTF file manipulation and interconversion

Language:PythonMIT28300

pyfaidx

Efficient pythonic random access to fasta subsequences

Language:PythonNOASSERTION44900

AHRD

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

Language:JavaNOASSERTION6300

cadmus

A GUI frontend for @werman's Pulse Audio real-time noise suppression plugin

Language:PythonGPL-3.0209100

Liftoff

An accurate GFF3/GTF lift over pipeline

Language:PythonGPL-3.042300

AGAT

Another Gtf/Gff Analysis Toolkit

Language:PerlGPL-3.044100

ggiraph

make 'ggplot' graphics interactive

Language:R77100

micro

A modern and intuitive terminal-based text editor

Language:GoMIT2467700

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Language:HTMLMIT222000