Terry Jones's repositories
dark-matter
Virus discovery
augur
Pipeline components for real-time phylodynamic analysis
auspice
Web app for visualizing pathogen evolution
best
Bayesian estimation supersedes the t-test
bih-cluster
BIH Cluster Wiki
CuratedGenBank
Curated Hepatitis B Virus Alignments from GenBank Data
dabeaz-blog
David Beazley's blog.
filta
A handy-dandy filter builder
ggboxplot-random-seed-demo
A Shiny app showing how ggboxplot resets the RNG to a constant value each time it is used
guardian-sandwich-problem
Solving a problem in the Guardian
matplotlib
matplotlib: plotting with Python
nextstrain.org
The Nextstrain website
pegwords
Utils for making mnemonic pegword-like word sequences from digit sequences
PRJNA692319_public
Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
rosalind
Solutions to some Rosalind problems
slurm-pipeline-feedstock
A conda-smithy repository for slurm-pipeline.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks