This repository contains ongoing work on Bayesian FDR and Adaptive Shrinkage. Because the repo was getting rather out of hand I moved the package to its own repo. So: the ashr R package is now here
To install the ashr package first you need to install devtools
install.packages("devtools")
library(devtools)
install_github("stephens999/ashr")
The main function in the ashr package is ash. To get minimal help:
> library(ashr)
> ?ash
To get more information download the repository, and look at Rcode/intro.html and Rcode/readme.html
(These html files are generated from Rcode/intro.rmd and Rcode/readme.rmd and can be
reproduced using the R package knitr. R studio provides a nice interface to accomplish this.
See for example http://jeromyanglim.blogspot.com/2012/05/getting-started-with-r-markdown-knitr.html)
If you are interested in contributing to this project, contact mstephens@uchicago.edu