terhorst

rstviewer

Live viewer for reStructuredText (RST) documents.

stats306

Materials for the R language based course STATS 306 (Introduction to Statistical Computing).

xsmc

Exact decoding of the sequentially Markov coalescent.

psmcpp

EandR-timeseries

Multi-locus analysis of evolve-and-resequence time series data.

stats504

repo

coal_hmm_review

autograd

Efficiently computes derivatives of numpy code.

bdsky

Birth Death Serial Skyline Model for BEAST2

bmws

demes-python

Tools for describing and manipulating demographic models.

expmv

MATLAB codes for matrix exponential times a vector.

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

HomeSpan

HomeKit Library for the Arduino-ESP32

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

jax-flows

Normalizing Flows in JAX 🌊

macss

mealie

Mealie is a self hosted recipe manager and meal planner with a RestAPI backend and a reactive frontend application built in Vue for a pleasant user experience for the whole family. Easily add recipes into your database by providing the url and mealie will automatically import the relevant data or add a family recipe with the UI editor

momi

MOran Models for Inference

momi2

Infer demographic history with the Moran model

mspsmc

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

pystan

PyStan, the Python interface to Stan

python-lint-action

GitHub Action for python linting with `isort` and `black`.

smcsmc

Demographic inference from whole genomes

snp-dists

Pairwise SNP distance matrix from a FASTA sequence alignment

spark-on-great-lakes

stats306_labs

tskit_cython_example

vimflowy

An open source productivity tool drawing inspiration from workflowy and vim