Computational Systems Biology of Cancer at Institut Curie

Computational Systems Biology of Cancer at Institut Curie's repositories

Logical_modelling_pipeline

Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)

Language:RGPL-3.010 40

Roma

Representation of Module Activity

Language:JavaLGPL-2.110 6 4

Reproducible-research-working-group

Materials of the working group on reproducible research in Computational Systems Biology of Cancer Group

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DeDaL

DeDaL (Data-Driven network Layout) is a Cytoscape 3.0 app developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris).

Language:JavaGPL-2.04 60

ElPiGraph.R

An R package to construct Elastic Principal Graphs

Language:HTMLGPL-3.04 70

ACSNMineR

R package for enrichment/depletion analysis of ACSN maps and gmt files

Language:TeXGPL-2.03 4 10

RNaviCell

R interface for interaction with NaviCell maps

Language:RLGPL-2.13 70

DockerCollection

A collection of Docker images to run different softwares

GPL-3.01 60

Roma_tutorial_v2018

Files needed for different tutorials on ROMA tool

Language:RGPL-3.01 70

rpgraph

Language:RGPL-3.01 50

rRoma_v2018

An r interface to perform ROMA

Language:RGPL-3.01 60

rRomaDash_v2018

a shiny dashboard to interact with rRoma

Language:RGPL-3.01 60

Sinkhorn-Knopp-normalization

MATLAB implementation of the normalization of a matrix by converting it to double stochastic matrix using Sinkhorn-Knopp algorithm from Sinkhorn, Richard, & Knopp, Paul. (1967). "Concerning nonnegative matrices and doubly stochastic matrices". Pacific J. Math. 21, 343–348

Language:Matlab1 50