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Computational Systems Biology of Cancer at Institut Curie (sysbio-curie)

Computational Systems Biology of Cancer at Institut Curie

sysbio-curie

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Location:Paris, France

Home Page:http://sysbio.curie.fr

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Computational Systems Biology of Cancer at Institut Curie's repositories

PhysiBoSSv1

Multiscale simulation of multi-cellular system

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NaviCell

A web tool for exploring large maps of molecular interactions

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PROFILE

Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper

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transmorph

Computational framework for dataset integration

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PhysiBoSS_Old

PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.

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ICA-in-Cancer-research-review-materials

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Invasion_model_PhysiBoSS

Graphical interface for the Invasion model developed with PhysiBoSS. In the "Supp_Mat" section are stored the supplementary materials for the analysis and the description of the model.

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Neko

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rROMA

An r interface to perform ROMA (updated version 2022)

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topic_modeling_lncRNAs

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MaBoSS

MaBoSS is a C++ software for simulating continuous/discrete time Markov processes, applied on a Boolean network.

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MaBoSS-Review

Notebook associated to the review about MaBoSS

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PhysiBoSS

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

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stabilized-ica

This repository proposes a python implementation of a stabilized ICA algorithm

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WebMaBoSS

A web interface for MaBoSS modeling

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.github

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biodica-environment

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sysbio-curie.github.io

Sysbio Curie website

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CFnetwork

Codes to reproduce the analyses and the construction of the CF signalling network.

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CFnetwork_cytoscape

Repository for the cytoscape session of the CF network paper

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Curie-PerMedCoE-Summer-School-2023

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hpcmaboss-artifact

HPC MaBoSS artifact

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KinaseSubstrateRelationship

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MaBoSS.GPU

The GPU implementation of MaBoSS tool.

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neko_dep

Dependencies for Neko in case pypath download manager does not work properly.

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paraExaStoLog

Paralel implementation of "Exact calculator of Stochastic Logistic models"

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PhysiCell-Jupyter-GUI

Template Jupyter notebook for PhysiCell-powered nanoHUB apps

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PhysiMeSS

PhysiCell MicroEnvironment Structure Simulation

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Pypath_pipeline

Automatic network construction using omnipath and pypath

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rRoma_comp

Repository for the comparison of sample-wise methods for the rRoma article

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