stjude / punctatools

Detection, colocalization, and quantification of spots / puncta

stjude/punctatools Issues

KeyError: 'extra_metadata' when running example "setup_images_to_stack.ipynb"
Updated 6 months ago1
Will not install on Mac M1 (osx-arm64) architecture
Updated 10 months ago1
ERROR: Could not find a version that satisfies the requirement bioformats (from intake-io) (from versions: none) ERROR: No matching distribution found for bioformats
Updated a year ago2
ERROR: Could not find a version that satisfies the requirement bioformats (from intake-io) (from versions: none) ERROR: No matching distribution found for bioformats
Closed a year ago
Installation failed intake_io and bioformats
Updated a year ago3
Result storage in output folders
Closed 2 years ago1
picture of the detected puncta in the output
Closed 2 years ago1
Trimming of for Cellpose
Updated 2 years ago1
Display LoG transformed image during puncta_setup.
Closed 2 years ago
Parameters sensitive to individual cell intensity
Updated 2 years ago1
Installation error: subprocess-exited-with-error, use_2to3 is invalid
Closed 2 years ago2