stheroux / AlgaeDNA

Comparing algae DNA taxonomy with morphology-based taxonomy from California stream algae samples

AlgaeDNA

This QIIME2 pipeline was developed for processing algae DNA metabarcoding data.

Parameters

qiime_params.sh contains the parameters to specify

Run

qiime_run.sh contains the QIIME2 commands

Primers

primers.sh file contains the cutadapt commands for each primer set