Stephen Kelly's repositories
annotate-peaks
Scripts for .bed file genomic region annotation with various tools
docker2singularity-demo
A demo for converting Docker images to Singularity images.
docker-centos6-sge
Docker container with CentOS6 & SGE installed
docker-sge
Dockerfile to build a container with SGE installed
peak-type-summary
ChIPSeeker genomic region summary plotting and annotation script
peaks-report
A quick report to make a plot & table of the number of peaks per BED file in a dir
conda-phoenix
how to set up Anaconda and Conda environments on NYULMC phoenix HPC cluster
DeepPATH
Classification of Lung cancer slide images using deep-learning
demultiplexing-stats
Demultiplexing stats report designed for NextSeq output
docker-singularity
Docker container with Singularity container installed inside
email-signature
My E-mail Signature
FLAC-to-mp3
Script for extracting music from archives and converting FLAC files to mp3 with ffmpeg
hic-bench-demo
Demo dataset & usage for HiC-Bench ChIP-Seq pipeline
LaTeX_docs
Documents I've created to be used as templates
logging-demo
Python logging demo
mover
dual movements & actions between webpage elements
Proteomic_Correlation_Shiny
A Shiny App to Support Proteomic Correlation
puzzle-box
Browser-based box clicking puzzle game
sns-wes-coverage-analysis
A quick analysis of low coverage regions from the SNS Whole Exome Sequencing analysis pipeline output
solvebio-python
SolveBio Python bindings
solvebio-r
SolveBio R Bindings
useful-bins
Useful desktop utilities - binary file downloads