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Stephan Michalik (stemicha)

stemicha

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Location:Greifswald

Twitter:@st_michalik

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Stephan Michalik's starred repositories

duf

Disk Usage/Free Utility - a better 'df' alternative

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BioGPT

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programming-math-science

This is a list of links to different freely available learning resources about computer programming, math, and science.

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ggiraph

make 'ggplot' graphics interactive

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ggh4x

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

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rstatix

Pipe-friendly Framework for Basic Statistical Tests in R

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ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

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verkko

Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

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DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

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lares

Analytics & Machine Learning R Sidekick

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BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

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PharmCAT

The Pharmacogenomic Clinical Annotation Tool

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hybracter

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

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ggplot_theme_Publication

This repo consists of three themes for the ggplot2 and new colour palettes. Enjoy the new themes!

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MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics

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supernova

An R package for teaching statistics from a modeling perspective

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posit-conf-2023-shinylive

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pgkb-ngs-pipeline

PharmGKB NGS Pipeline

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ggdag

:arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)

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NanopoReaTA

Nanopore Real-Time Analysis Tool

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opentrons-10x

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jhustatprogramming2022

Course website for Biostat 840 in Fall 2022

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AssemblyTron

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PROMISE

PROMISE is a distributed pipeline to detect post-translation modification on Mass Spectrometry data. The pipeline is solely for academic research, non-commercial or educational purposes; for other uses, please contact Weizmann institution.

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PlatePlan

Software to help plan your high-throughput, combinatorial liquid handling dispenses.

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data-science-blogs

A curated list of data science blogs

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Trycycler-paper

Supplementary figures, tables and scripts for the Trycycler paper

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COPICK

Framework designed to adapt Opentrons 2 robot for colony picking protocols

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fhircrackr

A package for convenient downloading fhir resources in xml format and converting to R data frames

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pharmvip-filter

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