badribio's repositories
ggalt
:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'
Bioinformatics-1
Code snippets
docker-star
Docker container for the star aligner
rock
:guitar: Rocking R at UMCCR
BioconductorOnContainers
Workshop for Bioc2019 for using Bioconductor on containers
chromoseq
Chromoseq WGS analysis
debrowser
Differential Count Data Analysis Toolbox
IntEREst
IntEREst: Intron Exon Retention Estimator
docker-rnaseq
A fat docker image for running RnaSeq
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
cgpBigWig
BigWig manpulation tools using libBigWig and htslib
pyranges
(beta) Performant Pythonic GenomicRanges
freeCodeCamp
The https://www.freeCodeCamp.org open source codebase and curriculum. Learn to code for free together with millions of people.
infercnv
Inferring CNV from Single-Cell RNA-Seq
sctransform
ChristophH/sctransform
svaba
Structural variation and indel detection by local assembly
workflows
Community maintained workflows & tools (with examples)
og-aws
📙 Amazon Web Services — a practical guide
oneliners
Useful bash one-liners for bioinformatics.
ThousandVariantCallersRepo
Thousand Variant Callers Project Repository
broad_wdl
Testing cromwell_wdl from broad
learn-fullstack-javascript
For help, ask in #questions at jscomplete.com/help
annotables
R data package for annotating/converting Gene IDs
docker-bsseq-r
docker image for doing bsseq analysis in R
cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
svviz
Read visualizer for structural variants
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
probabilistic-programming
Experimenting with and teaching probabilistic programming
genomepy
Download genomes the easy way.
alarmpi
This is the latest version of the alarm clock for Raspberry Pi project.