sridhar0605

training-collection

Collection of bioinformatics training materials

brc-parser

bam-readcount parser

SPLICE-q

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

100DaysOfAWS

analysis-wdls

Early stages of converting genome/analysis-workflows from CWL to WDL

analysis-workflows

Open workflow definitions for genomic analysis from MGI at WUSM.

bam-readcount

Count bases in BAM/CRAM files

BigBookofR

The biggest collection of R books (and maybe later some other resources too)

cloud-workflows

Infrastructure and tooling required to get genomic workflows running in the cloud

d3-tube-map

Draw tube maps in the style of the London Underground using d3

espresso

ggkegg

Analyzing and visualizing KEGG information using the grammar of graphics

ggpattern

ggplot geoms with pattern fills

hvplot_interactive

IsoVis

IsoVis enables fast and informative visualization of isoform structures and expression levels.

mercury

Mercury: easily convert Python notebook to web app and share with others

minion_qc

Quality control for MinION sequencing data

nf-core-rnanano

Nextflow pipeline for analysis of Nanopore RNA sequencing

pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram)

PythonNumericalDemos

Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

rMATS-long

RNA-seq

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

rust-data-analysis

The ultimate data analysis with Rust course.

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib

sridhar0605

GitHub Profile

sridhar0605.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

staticrypt

Password protect a static HTML page

test_porting_r

testing

VennDetail

VennDetail: a bioconductor package for VennDiagram visualization and details extraction

zgtf

gtf conversion utlity