spond

gb_taxonomy_tools

GenBank taxonomy processing tools

IgSCUEAL

B-cell 454 processing

hyphy-support

Examples/patches etc created in response to HyPhy issues

pubs

Scripts and data for group publications

SARS-CoV-2-variation

BUSTED-SRV

The effect of synonymous rate variation on BUSTED

CV.js

D3/Bootstrap CV generator

TestForPositiveSelection

alignment-tutorial-js

BioExt

A few handy bioinformatics tools not already within BioPython

course-description.js

Simple D3/Bootstrap based course description pages

d3-array

Array manipulation, ordering, searching, summarizing, etc.

hivclustering-1

hivtrace

hivtrace-viz

hyphy

HyPhy: Hypothesis testing using Phylogenies

hyphy-gui

Desktop application for HyPhy

hyphy-vision

Visualize HyPhy results in your browser

IAV-H3N2-analysis

Comparative analysis of H3N2 human/avian/mammalian isolates.

layout-phylotree

layout.phylotree

libtn93

C library to compute Tamura-Nei distances between (nucleotide) strings

misc

MNM_SelectionTests

Tests of selection incorporating multinucleotide mutations

phylotree.js

Interactive viewer of phylogenetic trees

PolEvolution

HyPhy scripts to perform multi-patient rate analyses on longitudinal pol isolates

SARS-CoV-2

SARS-CoV-2-clade-analysis

SequenceComparison

talks

Various Talks/Presentations

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission