Beast code in Giters

Christoph Sommer's repositories

pyqt-stylesheets

PyQt5 stylesheets as submodule

Language:PythonBSD-3-Clause73 10 1

Full-width-half-maximum of 2D spots: This jython-fiji macro computes the FWHM on bright spots on dark background by, first, finding all maxima in an image (using fiji Find Maxima) and second, iterating over all 2D peak locations. For each peak the horizontal, vertical and two diagonal line intensity profiles are extracted and a general Gaussian function is fit. From that the standard deviation and goodness-of-fit is extracted. The standard deviation is converted to FWHM.

Language:PythonGPL-3.02 2 1

cecog_django_doc

Django site for CellCognition documentation

Language:Python1 20

cellcognition_explorer_cedl

Language:PythonGPL-3.01 20

cellpose_counting

Language:PythonGPL-3.01 20

tadpose

Language:Jupyter Notebook1 20

trackpal

Language:PythonBSD-3-Clause1 40

undrift

Corrects local, non-linear drift in tissue by estimating dense optical flow and using it for warping images back to first frame.

Language:PythonLGPL-3.01 30

cell2layer

Language:PythonGPL-3.0020

PyImarisExportSWCWithSurfaceIntersection

Language:PythonGPL-3.0020

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

Language:JavaGPL-2.0020