Spencer Nystrom's repositories
plyranges
A grammar of genomic data transformation
DeepThought
A simple blog theme focused on writing powered by Bulma and Zola.
ggcat
Compacted and colored de Bruijn graph construction and querying
cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
universalmotif
Motif manipulation functions for R.
Mycelia
-omics knowledge graphs with Julia & Neo4J
memes-manual
remote host of the memes R package website to prevent website code from mucking up bioconductor
bioconda-recipes
Conda recipes for the bioconda channel.
rust-bwa
Rust wrapper of the BWA C API
didactic-potato
An R package for extracting and visualizing genomic signal
phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
vplotr
An R package for generating vplot matrices from MNase-seq or CUT&RUN data
MotifDb
This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.
UNC-Dissertation-Template
Updated LaTeX template for UNC dissertations based on Björn Brandenburg's template
bioinfo-vagrant
A Vagrant R bioinformatics/development environment