snystrom

memes

An R interface to the MEME Suite

cmdfun

Framework for building R interfaces to shell commands

didactic-potato

An R package for extracting and visualizing genomic signal

rd4tools

An R interface to d4tools

vplot

A commandline tool for generating vplot matrices from paired end sequencing data such as MNase-seq, ATAC-seq, or CUT&RUN.

bamf

A simple tool for manipulating bam entries by fragment size

cutNrun-pipeline

Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.

memes_docker

nested-data_workshop

snystrom.github.io

bioconda-recipes

Conda recipes for the bioconda channel.

bioconductor_docker_meme

bioinfo-vagrant

A Vagrant R bioinformatics/development environment

DeepThought

A simple blog theme focused on writing powered by Bulma and Zola.

faire-pipeline

ggcat

Compacted and colored de Bruijn graph construction and querying

memes-manual

remote host of the memes R package website to prevent website code from mucking up bioconductor

memes_paper

MotifDb

This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.

Mycelia

-omics knowledge graphs with Julia & Neo4J

nystrom-niederhuber_development_2020

parseQuantStudio

phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

plyranges

A grammar of genomic data transformation

rd4

Readr.jl

rust-bwa

Rust wrapper of the BWA C API

UNC-Dissertation-Template

Updated LaTeX template for UNC dissertations based on Björn Brandenburg's template

universalmotif

Motif manipulation functions for R.

vplotr

An R package for generating vplot matrices from MNase-seq or CUT&RUN data