snakemake-workflows / rad-seq-stacks

snakemake-workflows/rad-seq-stacks Issues

Add benchmark directives
Closed 5 years ago
Add output types of stacks populations script to config.yaml
Closed 5 years ago
Replace output file parameter checks with json schema
Updated 5 years ago
Optimize plot_kmer_mapping
Updated 5 years ago
Make use of replicates
Updated 5 years ago
Remove reads classified (as contamination) by kraken before starting stacks.
Updated 5 years ago
Check and document the amount of filtering that is applied by default by the stacks populations command
Updated 5 years ago
QC: plot of pairwise locus distances
Updated 5 years ago
Replacement of populations step with BWA+Varlociraptor
Updated 5 years ago
Reduce report file size
Updated 5 years ago
rbt_release missing file
Closed 5 years ago2