snafees

ortho_seqs

Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.

Kipoi-GWAS

kmermaid

k-mer similarity analysis pipeline.

Molecular-language-discovery-of-cell-to-cell-communication-molecules-from-RNAseq-data

primate-brain-organoid-paper

Manuscript for k-mer based comparative transcriptomics

snafees.github.io

My personal website!

airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

california-county-scraper

Python Tool for Scraping Bay Area County Websites for Covid-19 Data

hello-world

ideas, thoughts, etc.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core_website

Code and files for the main nf-core website.

openconnect-gp-okta

python

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Spid.jl

test-datasets

Test data to be used for automated testing with the nf-core pipelines

testVM

test repo

usher_wiki

docs holder for usher wiki