slw287r

Richard's repositories

izlib

Drop in replacement for zlib.h by isa-l.

Language:CMIT5 20

mntr

Monitor process (and subprocesses if any) mem and cpu usage

Language:C5 20

kmsk

Mask homologous sequences in query fasta(s) by kmers of subject fasta

Language:CMIT2 10

bwa-mem2

The next version of bwa-mem

Language:C++NOASSERTION1 10

Conifer

Calculate confidence scores from Kraken2 output

Language:CBSD-2-Clause1 10

trf

Tandem Repeats Finder with piped I/O

Language:CAGPL-3.01 10

await

28Kb, small memory footprint, single binary that run list of commands in parallel and waits for their termination

MIT000

ctl

The C Template Library

Language:CMIT010

FastANI

Fast Whole-Genome Similarity (ANI) Estimation

Language:C++Apache-2.0000

gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

000

imgt

Get image dimensions

Language:C010

isa-l

Intelligent Storage Acceleration Library

Language:CNOASSERTION010

klib

A standalone and lightweight C library

Language:CMIT010

kraken2-server

Kraken2 Server

Language:C++NOASSERTION000

ksw2

Global alignment and alignment extension

Language:CNOASSERTION010

libxlsxwriter

A C library for creating Excel XLSX files.

NOASSERTION000

llama2.c

Inference Llama 2 in one file of pure C

MIT000

llm.c

LLM training in simple, raw C/CUDA

000

log.c

A simple logging library implemented in C99

MIT000

mgi-adapters

Trim adapters from MGI sequence data

MIT000

mSigma

Strain-level Identification of Genomes from Metagenomic Analysis for Biosurveillance

Language:C++000

pggb

the pangenome graph builder

Language:ShellMIT000

samstat

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

Language:CNOASSERTION000

sdust

Symmetric DUST for finding low-complexity regions in DNA sequences

Language:C010

snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Language:C++Apache-2.0010

taxdb

Get blast names from NCBI taxdb.

Language:CMIT010

trimadap

Fast but inaccurate adapter trimmer for Illumina reads

Language:CMIT010

usher

Ultrafast Sample Placement on Existing Trees (x86-64 static build)

Language:C++MIT000

vsearch

Versatile open-source tool for microbiome analysis

Language:C++NOASSERTION000

x9

high performance message passing library

Language:CBSD-2-Clause000