BioCypher mirDIP adapter
This is an adapter for the mirDIP dataset, which is a collection of miRNA-target
interactions. The dataset is available
here. The adapter is based on
version 5.2 of the dataset, which it assumes to be located in the
data/mirDIP_Bidirectional_search_v_5_2 folder.
Usage
To create a standalone BioCypher database of the mirDIP dataset, run the
create_mirDIP.py script. This will use the adapter in mirDIP_adapter.py to
create protein and miRNA nodes and relationships between them, ready to load
into a Neo4j DBMS in the biocypher-out folder. To integrate the mirDIP
interaction data with other data in an extended BioCypher database, follow the
instructions for adapter usage on
https://biocypher.org.